SE3930021

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3919
  • Vitis vinifera
  • SE3930021
  • hAT
  • Hat3
  • chr18:14213970-14214392
  • CGTTTGAA
  • TTTGAACATAGTTTTAAAAGGTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
CG       A  --              GCTTTAAG   A   TGAGCTGTGCCTAGGCTCAAGGCGCAACCACTCCCTAGTTATAGCTCTTCCTAGCCAAGACATGCACCTTATTGAAGAGGCGTGCCTTATTGACTTTTATTCTTCTTTTTTAAACACTTTTATTTTTGAAAATTTTAATTGTATATTGAAATTTATATAATTTCATTACTTTT
  TTTGAAC TA  GTTTTAAAAGGTGT        TGC CCT                                                                                                                                                                             
  ||||||| ||  ||||||||||||||        ||| |||                                                                                                                                                                              
  AAGTTTG GT  CAAAATTTTCCACG        ACG CGG                                                                                                                                                                             
         C  AA              ----TTCC   -   ATTCCGCGTTTTCAGAGGATATCGAAGTCGCATCCCACGTCGTGTCCCGCACGTGAACTCACTTCACTTTACGTTGTATCCTACGTATAGTTAAAATATTTTATACTAAGTTTTAGATTACGTTAGTTATTTTTTAAATTCTAAGCTTTGTAAATTTTCTTTGTAAGTTATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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