SE3950027

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3925
  • Vitis vinifera
  • SE3950027
  • PIF/harbinger
  • To5
  • chr14:16424535-16424761
  • TAA
  • AGGTGGTGTTTGTTTTTTGGCTGAATAGAAAAAGTCAAAATATTTGGCTTTTTCTATTCAGCTAAAAGTAACTTGTTGATATCATCCAACATAACTAAAATGAACTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                                                                        T            C        C    A         TA
  AGGTGGTGTTTGTTTTTTGGCTGAATAGAAAAAGTCAAAATATTTGGCTTTTTCTATTCAGCTAAAAGTAAC TGTTGATATCAT CAACATAA TAAA TGAACTTAT  
  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| |||||||||  T
  TCCACCACAAACAAAAAACCGATTTATCTTTTTCAGTTTTATAAACTGAAAAAGATAAGTTGATTTTCATTG ACAACTGTAGTA GTTGTATT ATTT ACTTGGATA  
AA                                                                        T            A        A    A         CC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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