SE3950031

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3929
  • Vitis vinifera
  • SE3950031
  • PIF/harbinger
  • To9
  • chr14:27500058-27500369
  • TTA
  • AGGTTATGTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TT           ------------GACTAT       TATT            ----------      TA     ----TA    -      AC  TTGG    ATAATAGAAAATATAAAAAAAAATCAAATATAATTAAAATTTATCCAAACTTTATATATTTTTAA
  AGGTTATGTTT                  GGGAAAG    GAGGAAATAAAA          AAGTGT  AAGAA      TGAT TTTTTT  GT    TTTC                                                                 
  |||||||||||                  |||||||    ||||||||||||          ||||||  |||||      |||| ||||||  ||    ||||                                                                 A
  TCCAATACAAA                  TCCTTTT    TTCCTTTATTTT          TTCATA  TTCTT      TATT ATTTTA  TA    TTTG                                                                 
AT           ACAAATATTTTATAGAAT       GCAC            ATTTTTCCTT      --     TTTATT    T      TC  --AA    AATTATTTAATAAAAATATACGAAGAAGTTCGAATAAAAAAGAAATAGTATATTTCTAATTTATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End