SE3950041

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3939
  • Vitis vinifera
  • SE3950041
  • PIF/harbinger
  • To5
  • chr3:15185304-15185530
  • TAA
  • AGGTGGTGTTTGTTTTTTTGCTGAATAGAAAAAGTCAAATATTTTGGTTTTTTCTATTCAGCTAAAAGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  T                                                   TCCTA                  A     T       ATTG
  AGGTGGTGTTTGTTTTTT GCTGAATAGAAAAAGTCAAATATTTTGGTTTTTTCTATTCAGCTAAAAGTA     TTGACATTATCCAATATA TTAAA TGAACTT    
  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||| ||||| |||||||    A
  TCCACCACAAACAAAAAA CGACTTATCTTTTTTGGTTTATAAAACCGAAAAAGATAAGTCGATTTTCAT     AACTGTAGTAGGTTGTAT GATTT ACTTGAA    
AA                  C                                                   TGTAC                  A     T       CAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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