SE3950042

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3940
  • Vitis vinifera
  • SE3950042
  • PIF/harbinger
  • To2
  • chr4:12836279-12836403
  • TTA
  • AGAGTGCGTTTGACAGTGATTGTAGAAAGTGTTTCTAGTATTTTTAATACTTGAAGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT            A        G   A            TA   T         AA    GA
  AGAGTGCGTTTG CAGTGATT TAG AAGTGTTTCTAG  TTT TAATACTTG  GGAT  
  |||||||||||| |||||||| ||| ||||||||||||  ||| |||||||||  ||||   
  TCTCATGCAAAC GTTATTAA ATC TTCATAAAGATT  AAA ATTGTGAAC  TTTA  
AT            C        A   C            GG   T         -C    AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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