SE3950045

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3943
  • Vitis vinifera
  • SE3950045
  • PIF/harbinger
  • To11
  • chr16:14685962-14686535
  • TTA
  • AGGGGGTGTTTGGTAC

Secondary structure and sequence

TSD    TIR
5'



3'
TT                ACAA      -     -- AAAA    T --              ---   -- TTTATGGTGAATGGGAAATGAATTTGGTGATTTTATTTCTAATGTTTAGATGAACCTAAGAATTCAATATTAAAATGATTATTTGTTTCCATTCTAATGTTTAATAATAATATGAATAAAAAAGAAAAAGAGATAAATTGACAATAATACCTTTACACAAAGTTTTAAATATTTTTTTTATTTAAAAAAATGAGATTTTTCTGTACTAAATAATAAGACTAAAA
  AGGGGGTGTTTGGTAC    AAATAA GAAAA  G    TTAA A  TTTTGTTTCCATTC   CTA  T                                                                                                                                                                                                                                
  ||||||||||||||||    |||||| |||||  |    |||| |  ||||||||||||||   |||  |                                                                                                                                                                                                                                A
  TCCTCCACAAACCATG    TACTCT ATTCC  A    CTGT T  AGATAGGGTAAGGA   GAG  A                                                                                                                                                                                                                                
AT                ----      T     TC ----    - AT              AGT   AG GTAAAGATATAAACCTATTTAAACTACTTCTGTCTTTACTTTATTTTTTACTAAAGTTGTTTTTAGTTTAGGGTGGATATTCACCCTAAAGTTACGTAGTGTTTATCCACTATAAGAATAAGTAAGTAGGGTATTCTTTTATACTTTATCAGATTTTAATAATAAAATGCAAACCTAAAGTAAGTAGTTCGGAATTACGAAGAAACGAGGTATTATTCTGATAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End