Plant MITE

SE3920047

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3945
Vitis vinifera
SE3920047
Mutator
M2
chr15:14441300-14441581
TTAAATAAA
AAGGGATAACCGATTAAAAGGGATGAAATCTTCCC

Secondary structure and sequence

TSD TIR

5'

3'

TTAAATA     A   CC           A     T T    CACC   GA         C   A  T     C   -CTAAAAAAT       --     A         -  T T     -----     AAAATAATCCTTTC
       AAGGG TAA  GATTAAAAGGG TGAAA C TCCC    TTG  AAACTAACC TTC CC TTTTT AAC          ACCCATT  TGACA AAATGTCCT CA C TTTTC     TTGCA              
       ||||| |||  ||||||||||| ||||| | ||||    |||  ||||||||| ||| || ||||| |||          |||||||  ||||| ||||||||| || | |||||     |||||               
       TTCCT ATT  CTAATTTTTCC ACTTT G AGGG    AAC  TTTGATTGG AAG GG AAAAA TTG          TGGGTAA  ACTGT TTTATGGGA GT G AAAAG     AATGT              
AAATAAA     A   AA           C     T T    TTTT   AT         -   G  T     C   AACTTCTCAT       AA     A         A  T T     TAATA     ACACACAAAATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3920047

TTAAATAAAGGGATAACCGATTAAAAGGGATGAAATCTTCCCCACCTTGGAAAACTAACCCTTCACCTTTTTTCAACCTAAAAAATACCCATTTGACAAAAATGTCCTCATCTTTTTCTTGCAAAAATAATCCTTTCTTTTAAAACACACATGTAAATAATGAAAATGTTGAAGGGTATTTATGTCAAAAATGGGTTACTCTTCAAGTTCAAAAATGGGGAAGGTTAGTTTTACAATTTTGGGATGTTTTCACCCTTTTTAATCAATTAATCCTTAAATAAA

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