Plant MITE

SE3920049

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3947
Vitis vinifera
SE3920049
Mutator
M1
chr6:7835089-7835323
TTATTTTTA
GGTTAATTTCATTCACTTCTCTTGAGGTTTTAGCTAAATACACCTGTCCTCCATTAGTTTGAAATTTCATCAAATACCTCC

Secondary structure and sequence

TSD TIR

5'

3'

TTATTTTTAA    A        CA      TTG   T   A           C  T        A                       -  ACTATTCTTTTCATTTGTTATTTTCA
          GGTT ATTTCATT  CTTCTC   AGG TTT GCTAAATACAC TG CCTCCATT GTTTGAAATTTCATCAAATACCT CC                          
          |||| ||||||||  ||||||   ||| ||| ||||||||||| || |||||||| ||||||||||||||||||||||| ||                           
          CCAA TAAAGTAA  GGAGGG   TCT AAA CGATTTATGTG AC GGGGGTAA CAGACTTTAAAGTAGTTTATGGA GG                          
ATTTTTATTC    C        AC      TAA   T   C           A  T        C                       A  AATAAAACTCACTGTCCCCTCCACTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3920049

TTATTTTTAAGGTTAATTTCATTCACTTCTCTTGAGGTTTTAGCTAAATACACCTGTCCTCCATTAGTTTGAAATTTCATCAAATACCTCCACTATTCTTTTCATTTGTTATTTTCACTCACCTCCCCTGTCACTCAAAATAAGGAAGGTATTTGATGAAATTTCAGACCAATGGGGGTCAAGTGTATTTAGCCAAATTCTAATGGGAGGCAAATGAAATCAACCCTTATTTTTA

Copy Cancel