SE3950050

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3948
  • Vitis vinifera
  • SE3950050
  • PIF/harbinger
  • To3
  • chr5:16422578-16422702
  • TAA
  • AGAGTGCGTTTTAGAGTGATTTTAGAAAGCGTTTCTAACATTTCTAACACTTGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     GC    TAG           A   C    C   C        CAC     TGATA
  AGAGT  GTTT   AGTGATTTTAG AAG GTTT TAA ATTTCTAA   TTGAA     
  |||||  ||||   ||||||||||| ||| |||| ||| ||||||||   |||||     A
  TCTTA  CAAA   TCACTAAGATT TTC CAAA ATT TAAAGATT   AACTT     
AA     GA    CCA           C   A    A   A        ATA     TTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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