SE3920051

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3949
  • Vitis vinifera
  • SE3920051
  • Mutator
  • M3
  • chrUn:30889843-30890400
  • TATTTGTTC
  • GGGTTAAATACACTTCACCTCCTCCACCTTTGGCATGTTTTACATTTTGCTCCCTCACATTCAAAACTCAACAATTTACCCCCAAAATTTGTTAAAGAGCAATATTTTACCGCCC

Secondary structure and sequence

TSD    TIR
5'



3'
TATTTGTTC     A      C  C        C        CA        A           -CAC   C           A   A   C A              G      T  A  G   AAACTTATTAAAAAATCAAT    A      TAAAT    AA    AGTTGAAATGGAATGAAAAACATCTCTTGTCCAAGTTCAAAGTTGTCACACTTTGCAAGTGCGTTCGAAAATCACAAATAGCCATGCATACATTTTTTCAAAAGTCAAAAATAAAAATTGGTA
         GGGTT AATACA TT ACCTCCTC ACCTTTGG  TGTTTTAC TTTTGCTCCCT    ATT AAAACTCAACA TTT CCC C AAATTTGTTAAAGA CAATAT TT CC CCC                    GAAC ATTTGT     GAAG  ACAA                                                                                                                           
         ||||| |||||| || |||||||| ||||||||  |||||||| |||||||||||    ||| ||||||||||| ||| ||| | |||||||||||||| |||||| || || |||                    |||| ||||||     ||||  ||||                                                                                                                            
         CCCAA TTATGT AA TGGGGGAG TGGAAACC  ACAAAATG GAAACGGGGGG    TAA TTTTGGGTTGT AAA GGG G TTTGAACAATTTCT GTTGTG AA GG GGG                    TTAG TGTTTG     GGAA  GTAT                                                                                                                           
CTTGTTTAT     C      A  A        T        AC        C           ATTA   A           A   C   A A              G      C  -  -   -------------------A    -      -----    --    TTTAATATTTTCCCTGATAAAAAAACGTGAGATCAAACTTATGATCAAACTTGAACCCATCTTGATTGAAACTTAATCGTCGGAACTTTACCCTAAAGGGTTTGCAGAAGTTTTATATCATCG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End