SE3920053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3951
  • Vitis vinifera
  • SE3920053
  • Mutator
  • M1
  • chr13_random:2643502-2643738
  • ATTTTCATT
  • GGGTTAATTTCATTCCCCTCCCCTGAGGTTTTGGCTAAATACATTTAGCCTCCATAGGTTCGAAATTTCATC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTTCATTA              CC                  C      C      C           C           A   A   CCCTTATTTTGAGTGGGAGGGAAGGTGAG
          GGGTTAATTTCATT  CCTCCCCTGAGGTTTTGG TAAATA ATTTAG CTCCATAGGTT GAAATTTCATC TAC CTT                             
          ||||||||||||||  |||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||| ||| |||                             T
          TCCAATTAAAGTAA  GGAGGGGATTCCAAAACT ATTTAT TAGATT GGGGTATCCAA TTTTAAAGTAG TTT ATG                             
ATTACTTTTA              AT                  A      A      A           A           -   -   GAGTAGATAGTAAAAATAAAGCATAAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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