Plant MITE

SE3950087

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3985
Vitis vinifera
SE3950087
PIF/harbinger
To1
chr17:2348549-2348880
TTA
AGGCTATGTTTGGTTCCCGGAAAATTTGAGGGAA

Secondary structure and sequence

TSD TIR

5'

3'

TT                       ATT        AATGCGAG             A     ---        A  ------  AGAAAAAATGAAGGAAAATAAAAAAATAGATTAAAAATTGATAAATTATTTTTTTTGTTACTTCAAACTCATTTTATTTATTTTAACTCA
  AGGCTATGTTTGGTTCCCGGAAA   TGAGGGAA        GGAAAGAAAATGC AAGGA   AAAGTAGA GG      AA                                                                                          
  |||||||||||||||||||||||   ||||||||        ||||||||||||| |||||   |||||||| ||      ||                                                                                           
  TCCGATACAAACCAAGGGCCTTT   GTTTCCTT        TCTTTTTTTTACG TTCCT   ACTAAAAG AG      CC                                                                                          
AT                       CAT        --------             A     TTT        -  TACAAA  AACAGGATACTTTTTATAGTTTCTTTTAGTTTATATTAATTTTGATTAATTTTTGAATACATAAAAATTTAATAAATTAGAAATATAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3950087

TTAGGCTATGTTTGGTTCCCGGAAAATTTGAGGGAAAATGCGAGGGAAAGAAAATGCAAAGGAAAAGTAGAAGGAAAGAAAAAATGAAGGAAAATAAAAAAATAGATTAAAAATTGATAAATTATTTTTTTTGTTACTTCAAACTCATTTTATTTATTTTAACTCATCAATATAAAGATTAAATAATTTAAAAATACATAAGTTTTTAATTAGTTTTAATTATATTTGATTTTCTTTGATATTTTTCATAGGACAACCAAACATGAGAAAATCATTTTCCTTAGCATTTTTTTTCTTTCCTTTGTACTTTCCGGGAACCAAACATAGCCTTA

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