SE2250008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4731
  • Zea mays
  • SE2250008
  • PIF/harbinger
  • To1
  • chr1:198469930-198470339
  • TAA
  • AGGGCCTGTTTGTTTCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G              -CT       TATATAATCTGGATTATAATCTAAATTATATAATCCAGATTATAATCTAGATATATTATAATCTATATGTAGTTGTTTGGTAGTTTAGATTATACAAATGTAGATTATTCACAAAGACAACAATACCCTTGTTTGTTTATTTAAGGTGAGAAAAGAAGGATGGTATATATTGTAA
  AGG CCTGTTTGTTTCAG   TATAGAT                                                                                                                                                                               
  ||| ||||||||||||||   |||||||                                                                                                                                                                               T
  TCC GGACAAACAAAGTC   TATTAGA                                                                                                                                                                               
AA   G              TAA       GAGGTCTAATATATTAGATCGCATTTATTAGGTAATCTATTTGTTTGTTGATCTAATACCCAAGTCTAATATATTAGATTTCGGATCTAATACTATTAGATTATTAGAGGAGTTTTCATCGAATAAACTCTAATAAAACAGTTTTCTGGGTGATGGGTACCAATACATTCATCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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