Plant MITE

SE2250009

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4732
Zea mays
SE2250009
PIF/harbinger
To2
chr1:44956760-44957363
TAA
AGAGCAACTCCAATAGTTCTCTAAA

Secondary structure and sequence

TSD TIR

5'

3'

TA            A            TAACTCTC      TTAAATTTAAGAAGTGAACAGAAAAATGCTTCTCCAATGGTTCTCTAAATAGACTTGCTAAATTTACTTAGTTGCTATTCAACTCTATTTACTCTCCACATTTAGCAACTCAGTAGGAACTCTCTAAATACAGTTGACGTCAATTTCTTCACACTAGCGTGATTATTTTTACCTTTCCCATACAGTGAGATAGCCAGTTATAACACACTCTTTTTTCATTTTCTAGCATAATGAGGTAGCTAGGTCAAACACGTATGACGCA
  AGAGCAACTCCA TAGTTCTCTAAA        TAAATT                                                                                                                                                                                                                                                                      
  |||||||||||| ||||||||||||        ||||||                                                                                                                                                                                                                                                                       
  TCTCGTTGAGGT ATCAAGAGATTT        GAACGA                                                                                                                                                                                                                                                                      
AA            C            --TTTATC      TGTTAGTACAAATCGTTCAACGATTTATCGATAATCTTCATTTTTTATTGAATCAGAGGTTATCAACGAGTATAAATCCTTCATCAAGCTAAAACTTAGATCGAAATCGCCGGGACAGAGATACTCTAGACGGACTATTATTCCAACTCTCGTCTCCTATACTCCCGCCTTCTTTTTTCCAGCCAGCTATACTTAATACCTACTCACCACCAGGCCACTGCGTTGGATACTCTTTCAATCCAAGCTGCCACTTCCTCTTTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250009

TAAGAGCAACTCCAATAGTTCTCTAAATAACTCTCTAAATTTTAAATTTAAGAAGTGAACAGAAAAATGCTTCTCCAATGGTTCTCTAAATAGACTTGCTAAATTTACTTAGTTGCTATTCAACTCTATTTACTCTCCACATTTAGCAACTCAGTAGGAACTCTCTAAATACAGTTGACGTCAATTTCTTCACACTAGCGTGATTATTTTTACCTTTCCCATACAGTGAGATAGCCAGTTATAACACACTCTTTTTTCATTTTCTAGCATAATGAGGTAGCTAGGTCAAACACGTATGACGCAAGTTTCTCCTTCACCGTCGAACCTAACTTTCTCATAGGTTGCGTCACCGGACCACCACTCATCCATAATTCATATCGACCGACCTTTTTTCTTCCGCCCTCATATCCTCTGCTCTCAACCTTATTATCAGGCAGATCTCATAGAGACAGGGCCGCTAAAGCTAGATTCAAAATCGAACTACTTCCTAAATATGAGCAACTATTGGAGACTAAGTTATTTTTTACTTCTAATAGCTATTTAGCAACTTGCTAAACATGATTGTAGCAAGCTATTTTTTAGAGAACTACTGGAGTTGCTCTAA

Copy Cancel