Plant MITE

SE2250015

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4738
Zea mays
SE2250015
PIF/harbinger
To6
chr1:243486266-243486636
TTA
AGGCTATTCACAATGGAGGTTTCATGGGGTGTTTC

Secondary structure and sequence

TSD TIR

5'

3'

TT                A         -GGG      ATGTATTAATTAGCC           CTATTTT     CAT      T  --   AA  A GAAGAGTTTCATGGAGTTTCATGGGGATGAAACCATGTTAACTCGTTTCCAAGATCTTGGAAACTGTGTGAAACCTCCATTGAGAGTGTTTTGTTT
  AGGCTATTCACAATGG GGTTTCATG    TGTTTC               TGCCACATCAG       GATGA   GTCACA CA  TTT  GA G                                                                                                
  |||||||||||||||| |||||||||    ||||||               |||||||||||       |||||   |||||| ||  |||  || |                                                                                                 
  TCCGATGAGTGTTACC CTAAAGTAC    ACAAAG               ACGGTGTAGTC       CTACT   TACTTT AT  GAG  AG A                                                                                                
AT                C         AGAG      ---------GTTTTT           TAAATAC     ---      -  GG   --  - GTTATCTCTCAAAGTAGAGTGATAAAGTATACAGTTGTATGAAGAATTTACGACGTATATTTATTGGTTATCCTAAATGAGTTAATATACTTCTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250015

TTAGGCTATTCACAATGGAGGTTTCATGGGGTGTTTCATGTATTAATTAGCCTGCCACATCAGCTATTTTGATGACATGTCACATCATTTAAGAAGGAAGAGTTTCATGGAGTTTCATGGGGATGAAACCATGTTAACTCGTTTCCAAGATCTTGGAAACTGTGTGAAACCTCCATTGAGAGTGTTTTGTTTGATCTTCATATAATTGAGTAAATCCTATTGGTTATTTATATGCAGCATTTAAGAAGTATGTTGACATATGAAATAGTGAGATGAAACTCTCTATTGAGAGAGGGTATTTCATTCATCCATAAATCTGATGTGGCATTTTTGGAAACAGAGACATGAAATCCCCATTGTGAGTAGCCTTA

Copy Cancel