SE2250017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4740
  • Zea mays
  • SE2250017
  • PIF/harbinger
  • To7
  • chr2:182508590-182508954
  • TTA
  • AGACTGAGCGCAACGGTGAACGCTA

Secondary structure and sequence

TSD    TIR
5'



3'
TT  A   AG      G  GAA G   --CCGCG     -----------  C    -GCATGT  A     -------------    -    - CTA  GCCGCAGCGGTGCCCCCTACAGCGCCCCCTACGTGTCGGTCCCCTTCTCTCTCCCCCCAGATCTAGCGTGTCACTGTTCATCACCCTAAACACTGTGC
  AG CTG  CGCAAC GT   C CTA       CCCCC           TC CCTT       CG CTGTA             GGGG GCAC C   TG                                                                                                  
  || |||  |||||| ||   | |||       |||||           || ||||       || |||||             |||| |||| |   ||                                                                                                   
  TC GAT  GCGTTG CA   G GAT       GGGGG           AG GGAG       GG GGGAT             GCGT GCCA G   GG                                                                                                  
AT  C   AG      G  ATG A   TTAAAAA     ATATAGTGAAA  A    ATAAAAA  -     AAAAAAGTAGAGG    C    A ---  GGATTTATGAGGGGGATATGGGGTGATGGTGATATTTTATAGTAAAAGATATAGTTGATAGTTAAAAAATAGATGATTGTTAATGAGCACCTGGGTGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End