Plant MITE

SE2250018

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4741
Zea mays
SE2250018
PIF/harbinger
To8
chr1:252263027-252263260
TTA
AGACCATCTCCAGCAG

Secondary structure and sequence

TSD TIR

5'

3'

TT                ATCAAACTAC        C      C                               ATATAAAAC A       CA        A          A    C   GTAC
  AGACCATCTCCAGCAG          ACCCATAC CATATT AAACTACACTCTATAAACAGTGCAATCTACA         G TGCAAAA  GTGTTTTT GTGATCATAT GGTG AAT    
  ||||||||||||||||          |||||||| |||||| |||||||||||||||||||||||||||||||         | |||||||  |||||||| |||||||||| |||| |||     
  TCTGGTAGAGGTCGTC          TGGGTATG GTATAA TTTGGTGTGAGATGTTTGTTATGTTAGATGT         C ACGTTTT  CACAAAAA CACTAGTATA CCAC TTG    
AT                -------GAA        A      C                               --------- -       -C        -          C    -   ATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250018

TTAGACCATCTCCAGCAGATCAAACTACACCCATACCCATATTCAAACTACACTCTATAAACAGTGCAATCTACAATATAAAACGATGCAAAACAGTGTTTTTAGTGATCATATAGGTGCAATGTACAATAGTTCACCCATATGATCACAAAAACACCTTTTGCACTGTAGATTGTATTGTTTGTAGAGTGTGGTTTCAATATGAGTATGGGTAAGCTGCTGGAGATGGTCTTA

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