SE2230021

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4744
  • Zea mays
  • SE2230021
  • hAT
  • Hat4
  • chr2:152249375-152249931
  • GTATCAAA
  • TAGGGATGGCAACGGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTATCAAA                 TTAAAACC      ---   AGAGATTACAAACCCGTACCCGCGAGATTAATGTTAAACACGTACCCGCACCCGCTACCCGCGACGGGTAGCGTATGTTACCCAAACCCGCTACCCGCGGGTTTATGGCACCCGCGGGCGCAGTCATATAATAAATATTTATTAAACTGATAGCGCATAATAATAAATATTTATTAAACTGATAAAAACATGTACCGATCTTAGCCAAAAGTTCTACGAGTTCCCTGGCGCCTGT
        TAGGGATGGCAACGGGT        CGCGGG   TAC                                                                                                                                                                                                                                           
        |||||||||||||||||        ||||||   |||                                                                                                                                                                                                                                           A
        ATCCCTACCGTTGCCCG        TGGGCG   GGG                                                                                                                                                                                                                                           
AAACTATG                 -TGTAAAA      CAC   TGCCCATTTTTGGGATATCCCACGCCCAAACCCACACTCAAACATGGGCACCCATGCCCAAACTAAGAGTTGGGCTGTCCAAAAAAGAGCACCCATACTTTTACAACATGGGCACGGACGTTTGGGCGTATGTGCGCACACACAGACACATCTGACATCTCGTGTACGTAGAGTTAAATCACGGTGGGGTTTTAGAAACTCGCTCGCCTCGGTTAGTCTACTATATTTTCTTCTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3