Plant MITE

SE2250023

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4746
Zea mays
SE2250023
PIF/harbinger
To10
chr2:117688908-117689254
TTA
A

Secondary structure and sequence

TSD TIR

5'

3'

      TT      TGTTTGGTTTCTTTAGTCTAGGGACTAAAGTTTAGTTAGGGGACTAAAGTTTAGTCCCTAACATGTTTGGTTTATGGGCTAAAAATAGTAAGAATATACTAAATGACTCATAAGAAGACTAAAATGGCCTTTAACATTCTCCTGCTATTAGTACAATTGAAC
        AGGCCA                                                                                                                                                                  
        ||||||                                                                                                                                                                  T
        ACAAAC                                                                                                                                                                  
ATTCCCCC      CAATCTCCCCGATTTCTAATCAGATATCAAAAATCAAAGTAAATCAGAGAAAAAACAGATTGTGATCCTGATTTTATACCTGATTTTATTAAATCAGAAATCAGGAAGTGTATACACGATTTTCTCTGATTTGGTATAATTAAGGTGTAAATAGGGAGTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250023

TTAGGCCATGTTTGGTTTCTTTAGTCTAGGGACTAAAGTTTAGTTAGGGGACTAAAGTTTAGTCCCTAACATGTTTGGTTTATGGGCTAAAAATAGTAAGAATATACTAAATGACTCATAAGAAGACTAAAATGGCCTTTAACATTCTCCTGCTATTAGTACAATTGAACTAAATGAGGGATAAATGTGGAATTAATATGGTTTAGTCTCTTTTAGCACATATGTGAAGGACTAAAGACTAAATTATTTTAGTCCATATTTTAGTCCTAGTGTTAGACAAAAAAGAGACTAAATGAAACTAAAAACTATAGACTAATCTTTAGCCCCTCTAACCAAACACCCCCTTA

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