Plant MITE

SE2230030

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4753
Zea mays
SE2230030
hAT
Hat8
chr2:11412318-11412729
CTCGAGGC
CTCGAGGCTAGGGATGAAAGTGGT

Secondary structure and sequence

TSD TIR

5'

3'

        GC                AATCC    TGTTA          -----A  ATTTTAAAATAAATATGTATAAAATTTGATGTTGATCTTTTCTTATGTTATCAAGCACATTAGTACAAATATGAATAAAATATTATATAAGTTGTTTTATGTATTATTTGCTCCCTACAACACAAAAAGTTGAAAAAATTACCGAATTTGTTTCC
  CTCGAG  TAGGGATGAAAGTGGT     GAAC     GAACAAATTT      AT                                                                                                                                                           
  ||||||  ||||||||||||||||     ||||     ||||||||||      ||                                                                                                                                                            
  GAGCTC  ATCCCTACTTTTGCCA     TTTG     ATAAATAAGC      TC                                                                                                                                                           
CG      --                --GCC    ---TC          CATTAG  AAAAAGGAAATTAACGCTTATTTATCCTATATCTTATATGTTATGTTTAAACATAAGAACAAAAATTGTAGGTCGAACAATTCTAAGTATTTTCCATTTGGAGCTTAAGTAGGATGTAAAAGAGTTTATTATCTATATTTGAAGCCATACCTAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2230030

CTCGAGGCTAGGGATGAAAGTGGTAATCCGAACTGTTAGAACAAATTTAATATTTTAAAATAAATATGTATAAAATTTGATGTTGATCTTTTCTTATGTTATCAAGCACATTAGTACAAATATGAATAAAATATTATATAAGTTGTTTTATGTATTATTTGCTCCCTACAACACAAAAAGTTGAAAAAATTACCGAATTTGTTTCCGAATCCATACCGAAGTTTATATCTATTATTTGAGAAAATGTAGGATGAATTCGAGGTTTACCTTTTATGAATCTTAACAAGCTGGATGTTAAAAACAAGAATACAAATTTGTATTGTATATTCTATATCCTATTTATTCGCAATTAAAGGAAAAACTGATTACCGAATAAATACTGTTTCCGACCGTTTTCATCCCTACTCGAGGC

Copy Cancel