SE2210037

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4760
  • Zea mays
  • SE2210037
  • Tc1/Mariner
  • St3
  • chr2:90303750-90304013
  • TA
  • TACTCCCTCCGGTTTCCTATTAGTTGTCGTTTTGGATAAGGTTCGAGTCACACTTATAAAATTTTGACTA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                T      G - T  A   -A  CTT   A           -C    -   TATTTTGTTATTTAGTTTTGGGACCTAATATTTATATGCACCAATTTGTCATA
TACTCCCTCCGGTTTCCTATTAGTTGTCGTTT GGATAA G T CG GTC  CA   ATA AATTTTGACTA  AAAT AAC                                                     
|||||||||||||||||||||||||||||||| |||||| | | || |||  ||   ||| |||||||||||  |||| |||                                                      
ATGAGGGAGGCCAAAGGATAATCAACAGCAAA CCTGTT C G GC CAG  GT   TAT TTGAAACTGGT  CAAA AAA                                                     
                                T      G T T  -   AG  -TT   A           TA    A   CAATTTTATGTTTATTTGAGAATTATGTAAATATGAAAATATTTTCATGAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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