Plant MITE

SE2220040

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4763
Zea mays
SE2220040
Mutator
M4
chr1:270410593-270410845
ATATTTAGG
GGGAACGTATCTGGTGCTCAAAGGGGTATGGTGCTCATGTGCACATTTTAAATCTGGTGCATTCATCTTGTATTCAACAGCACCAGCTAATTTTACGAAGAACCCCTCCCACC

Secondary structure and sequence

TSD TIR

5'

3'

ATATTTAGG                                                                  C       C       CCA         AC    A      C     CGGGG
         GGGAACGTATCTGGTGCTCAAAGGGGTATGGTGCTCATGTGCACATTTTAAATCTGGTGCATTCAT TTGTATT AACAGCA   GCTAATTTT  GAAG ACCCCT CCACC     
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||   |||||||||  |||| |||||| |||||      
         CCCTTGCATAGACCACGAGTTTCCCCATGCCACGAGTACACGTGTAAAATTTAGACCACGTAGGTA AGCGTAG TTGTCGT   TGATTAAAA  CTTC TGGGGA GGTGG     
GGATTTATA                                                                  A       A       -CG         CA    G      A     AAGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220040

ATATTTAGGGGGAACGTATCTGGTGCTCAAAGGGGTATGGTGCTCATGTGCACATTTTAAATCTGGTGCATTCATCTTGTATTCAACAGCACCAGCTAATTTTACGAAGAACCCCTCCCACCCGGGGAGGAAGGTGGAAGGGGTGCTTCACAAAATTAGTGCTGCTGTTAGATGCGAAATGGATGCACCAGATTTAAAATGTGCACATGAGCACCGTACCCCTTTGAGCACCAGATACGTTCCCATATTTAGG

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