SE2230042

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4765
  • Zea mays
  • SE2230042
  • hAT
  • Hat6
  • chr1:28625435-28625989
  • CTCCCCGT
  • TAGGGATGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCCCCGT           -------    -  AATTCCCCGTCGGGTTTTAGCTCCCCAAACCCATCCCCGCCACAAAAAAAATTTCCCCGCGGGGATCCCCACGAACGCTTGCGGGGGACATTTCTTCCCCATCCCCGTTCCCCGCGGGGATAAATCCCCGTCGGGGATCCCCATCCCCACTTAAATTATAATTAAATCGTACGTCATTTGTTATTAATGTAAAATATTGTCACTTATACACATTGTTAGATGTAAAATTCATTATGTGCACATTAAAA
        TAGGGATGGCA       ACGG GG                                                                                                                                                                                                                                                        
        |||||||||||       |||| ||                                                                                                                                                                                                                                                        T
        ATCTCTACCGT       GGGC AG                                                                                                                                                                                                                                                        
TGCCCCTC           TACTCCT    T  GGGCTAAGGGGCGCCCCTTAAGGAGATAATCCCCTACCCCTACCACTTCAAAGAAGGGGGTGCCCCTACATTTATCCCTTTTCAAGAGGGGGCTGCCCATTTGCCCCTGCCCCTACCCCTTCGTAAGGGATAGGGGTAAGGGGCGCCCCTGGGCAATTTGAATGTACACTGTTACAAAAGTACATTATCAATTACTATTTTCATTTCTTAATGGAACAGTTCTCTAGTGGGTAACATGTTTATGTAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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