SE2250075

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4798
  • Zea mays
  • SE2250075
  • PIF/harbinger
  • To4
  • chr5:188663160-188663281
  • TTA
  • AGGGCTAGTTTGGGAACACCGTTTTCTCAAGGGATTCCAATTTTTCCAAGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 A  GT  T  C        -C  A         -     AATGA
  AGGGCTAGTTTGGGAAC CC  TT CT AAGGGATT  CA TTTTTCCAA GGAAA     
  ||||||||||||||||| ||  || || ||||||||  || ||||||||| |||||      
  TCCCGATCAAACCCTTG GG  AA GA TTCCCTAA  GT AAAAAGGTT CCTTT     
AT                 -  AT  T  -        AA  A         T     AATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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