SE2230076

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4799
  • Zea mays
  • SE2230076
  • hAT
  • Hat18
  • chr3:201845971-201846519
  • CCCGCACG
  • GCACGTAGGGCTGGACGA

Secondary structure and sequence

TSD    TIR
5'



3'
CCC  AC      C    ---   -AAAA    TA     TTAACTC     A          -TAG        CTCGACTTGACTCGTTTATAATTTGTAACGAGTCGAGCTTGTATTTCAACTCGTTATGATAACGAGCCAACTCGAGCTGGCTCGTGAGCTGACTCGCGAGCTAAACGAGTTGGAGTAATTAGTCAAATCACAATAATCTCTGATCCAAAATAGTTAATCTTGTACTCTACTATAGTTAATCTTGTTCTTTGTTGAGTGTGGAATCT
   GC  GTAGGG TGGA   CGA     CTCG  GCTCG       GCTCG CTCGACTCGA    TGGCTCGA                                                                                                                                                                                                              
   ||  |||||| ||||   |||     ||||  |||||       ||||| ||||||||||    ||||||||                                                                                                                                                                                                              T
   CG  CATCCC ACCT   GCT     GAGC  CGAGC       CGAGC GAGCTGAGCT    CGAGCAAT                                                                                                                                                                                                              
GCA  CC      C    ATA   CAACC    --     -------     C          TGAC        TCTATTGCTCGACCGAGCCGAGCTGAGCAAAACAATTGCTCGATTTCTTGGTTGAGCCGAGCTGAGCAAACGATTGAGCTCGACCGAGCAAATCGAGCGCTCGGTTGCGCTATTATGGTACAGATCACAGATGCTTGCCTATATTTTTGTACATCGTTTTCTTTTCTTCCACTAGATAAATCTTTTTTCTTATCTGAAACGTTGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End