SE2220082

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4805
  • Zea mays
  • SE2220082
  • Mutator
  • M10
  • chr7:20338089-20338261
  • TAAATAAAA
  • AGGGAAATTTGGATCCATACCATTAAAAGATCACCACTTTGGATCCATACCATTACT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAATAAA     AAT       C                ACC         CC       -T   AT     TTACATGTGGGTCCA
        AGGGA   TTGGATC ATACCATTAAAAGATC   ACTTTGGAT  ATACCAT  ACT  CTCAC               
        |||||   ||||||| ||||||||||||||||   |||||||||  |||||||  |||  |||||                
        TCCTT   AACCTAG TATGGTAATTTTCTAG   TGAAATCTA  TATGGTA  TGG  GGTGT               
AAAATAAA     GTT       A                GTT         TA       CC   --     ACAGTAACTGAGTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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