Plant MITE

SE2250086

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4809
Zea mays
SE2250086
PIF/harbinger
To40
chr5:179542271-179542467
TAA
AGGCCCTGTTTGTTTCCTTCCAAGATTATATAATCTAGCTTATGAATTATATAAGCACCTAACGACCTGCTTATGGATTATTATAATCTAG

Secondary structure and sequence

TSD TIR

5'

3'

TA     C         -     CA            C       --   A   ---T       CCT      - T C   -----        T         GT
  AGGCC TGTTTGTTT CCTTC  AGATTATATAAT TAGCTTA  TGA TTA    ATAAGCA   AACGAC C G TTA     TGGATTAT ATAATCTAG  
  ||||| ||||||||| |||||  |||||||||||| |||||||  ||| |||    |||||||   |||||| | | |||     |||||||| |||||||||   
  TCCGG ACAAACAAA GGGAG  TCTAATATATTA GTCGAAT  ATT AAT    TGTTTGT   TTGTTG G C AAT     ACCTAATA TATTAGATC  
AA     A         T     -A            A       TT   C   TACC       ---      T T T   AATCT        -         TA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250086

TAAGGCCCTGTTTGTTTCCTTCCAAGATTATATAATCTAGCTTATGAATTATATAAGCACCTAACGACCTGCTTATGGATTATTATAATCTAGGTATCTAGATTATATAATCCATCTAATAATCTGTGTTGTTTGTTTGTCCATTAACTTATTTAAGCTGAATTATATAATCTAGAGGGTAAACAAACAAGGCCTAA

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