Plant MITE

SE2220096

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4819
Zea mays
SE2220096
Mutator
M11
chr3:148215808-148216063
CACAAATAA
GAGGACATATCCTGTGCAATCACTCATTTTGGTGCAAGCGTGCAATCAAACTATCCAGAGCATCCAATCTAGATC

Secondary structure and sequence

TSD TIR

5'

3'

CACAAATAA A   -C                  C                        A T   CA A      A  C      ---C   GG  --  ATATGGAAGGGGTTAAAAGTAAAATAGGTACT
         G GGA  ATATCCTGTGCAATCACT ATTTTGGTGCAAGCGTGCAATCAA C ATC  G GCATCC AT TAGATC    AAC  TT  TC                                
         | |||  |||||||||||||||||| |||||||||||||||||||||||| | |||  | |||||| || ||||||    |||  ||  ||                                A
         C CCT  TATAGGATACGTTAGTGA TAGGACCACGTTCGTACGTTAGTT G TAG  C CGTAGG TA ATCTAG    CTA  CT  CA                                
 AATAAACA C   TT                  A                        C C   AC A      C  T      ATTA   --  GA  ATAAAATATAAATTGGGGAAGGTAGATTTTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220096

CACAAATAAGAGGACATATCCTGTGCAATCACTCATTTTGGTGCAAGCGTGCAATCAAACTATCCAGAGCATCCAATCTAGATCCAACGGTTTCATATGGAAGGGGTTAAAAGTAAAATAGGTACTATGTTTTAGATGGAAGGGGTTAAATATAAAATAACAGTCATCATTAGATCTATATCGGATGCACCAGATCGCTTGATTGCATGCTTGCACCAGGATAAGTGATTGCATAGGATATTTTCCCCACAAATAA

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