SE2210106

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4829
  • Zea mays
  • SE2210106
  • Tc1/Mariner
  • St7
  • chr5:7664542-7664780
  • TA
  • TACTACCTCCGTTCTTAGATATATGACATTGTTGACTTTTTTAAAAAAACTTTGACCGCTCGTCTTATTCAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
    A                         G    C      AAA                  C          AAATCAC      TAATTTATTTTGTTATGATTTATTTTATCACTT
TACT CCTCCGTTCTTAGATATATGACATT TTGA TTTTTT   AAAACTTTGACCGCTCGT TTATTCAAAA       GAATTA                                 
|||| ||||||||||||||||||||||||| |||| ||||||   |||||||||||||||||| ||||||||||       ||||||                                  
ATGA GGAGGTAAGAATTTATATACTGTGA AACT AAAAAA   TTTTGAAACTGGTGAGTA AATAAGTTTT       AGCTTT                                 
    G                         A    A      -AC                  A          ATAAATA      TACATTTTAAAGTTCAGTACGAGTTTGTTGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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