SE2250111

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4834
  • Zea mays
  • SE2250111
  • PIF/harbinger
  • To47
  • chr4:52819323-52819448
  • TAA
  • AGGGTTGATTTGGTGACAAGGGGATCCCGAGAGGATTGGAGGGGATTAAGGGGGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 AAG         A                 A          AAA
  AGGGTTGATTTGGTGAC   GGGATCCCG GAGGATTGGAGGGGATT AGGGGGAAAT   
  |||||||||||||||||   ||||||||| ||||||||||||||||| ||||||||||   A
  TCCCGACTAAACCACTG   CCCTAGGGC CTCCTAGCCTCCCCTAA TCCCCCTTTA   
AA                 -GG         C                 C          ATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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