Plant MITE

SE2250118

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4841
Zea mays
SE2250118
PIF/harbinger
To12
chr4:4065344-4065548
TTA
AGGGGGTGTTTGAATGCACTAGAGCTAATAGTTAGTAAGCTAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TT                        C           AA       ATAT      -AGAAT     -----  -   ACAAATAGTTAGCTAACTAGTAGCTAGT
  AGGGGGTGTTTGAATGCACTAGAG TAATAGTTAGT  GCTAAAA    ACTAGT      TAGCT     AG CTA                            
  |||||||||||||||||||||||| |||||||||||  |||||||    ||||||      |||||     || |||                            T
  TCCCCCACGAACTTACGTGATCTC ATTATCAATCA  CGATTTT    TCGATC      GGTTT     AT GAT                            
AT                        T           -C       --AA      TCTGTA     GTGGG  G   TATCAAGTTGATAATCGATAAAAATCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250118

TTAGGGGGTGTTTGAATGCACTAGAGCTAATAGTTAGTAAGCTAAAAATATACTAGTAGAATTAGCTAGCTAACAAATAGTTAGCTAACTAGTAGCTAGTTTACTAAAAATAGCTAATAGTTGAACTATTAGGTAGGGTGTTTGGATGTCTCTAGCTAATTTTAGCCACTAACTATTATCTCTAGTGCATTCAAGCACCCCCTTA

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