Plant MITE

SE2250126

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4849
Zea mays
SE2250126
PIF/harbinger
To51
chr6:74740294-74740707
TAA
AGGCTAGCTCCAGCAA

Secondary structure and sequence

TSD TIR

5'

3'

TA     AG         GTAA  -   ---AA  G       C  TAAATA       -  AATTGGTCCTCTACGCCTTTCAGCAGCGTCCTCTAAACGGTCCTCTAAATTTAGAGGACGCTGCTGGATTCTCTATGTATAGAGTTTCTCTAAACGGTCTTCTATCCATTTGAATACTTTAAATAACCGGTTTAGCAAAACTAAAATATG
  AGGCT  CTCCAGCAA    CC CTA     AT TTCTGTA CC      TAGAGGA TT                                                                                                                                                      
  |||||  |||||||||    || |||     || ||||||| ||      ||||||| ||                                                                                                                                                      T
  TCCGA  GAGGTCGTT    GG GAT     TA GAGATAT GG      AGGAAAT TC                                                                                                                                                      
AA     CA         -GCA  A   ATAGG  G       A  -----C       G  AGAAGAGATTTTCTAAAGTAGGAGATATAGAGAAAGGAGAGGTTGTTGCAGGAGATTTAGTGCGGGAGATATGAGTTTATAGATATAATCTCTGTAAAAAATAAAAATAAAAAACATGTATGCATAAACAGTATGAGAGTTTACATAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250126

TAAGGCTAGCTCCAGCAAGTAACCCTAAAATGTTCTGTACCCTAAATATAGAGGATTAATTGGTCCTCTACGCCTTTCAGCAGCGTCCTCTAAACGGTCCTCTAAATTTAGAGGACGCTGCTGGATTCTCTATGTATAGAGTTTCTCTAAACGGTCTTCTATCCATTTGAATACTTTAAATAACCGGTTTAGCAAAACTAAAATATGTACAATACATTTGAGAGTATGACAAATACGTATGTACAAAAAATAAAAATAAAAAATGTCTCTAATATAGATATTTGAGTATAGAGGGCGTGATTTAGAGGACGTTGTTGGAGAGGAAAGAGATATAGAGGATGAAATCTTTTAGAGAAGACTGTAAAGGACGGATATAGAGGATGGATATAGAGGACGTTGCTGGAGACAGCCTAA

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