SE2250135

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4858
  • Zea mays
  • SE2250135
  • PIF/harbinger
  • To33
  • chr6:55736778-55736920
  • TAA
  • AGGGCTTGTTCGTTTTGCTCTCAATCCATGTGGATTGAGTGGGATTGGATGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            TT   C   CAA             A           ---------------------------    TTT
  AGGGCTTGTTCG  TTG TCT   TCCATGTGGATTG GTGGGATTGGA                           TGGG   
  ||||||||||||  ||| |||   ||||||||||||| |||||||||||                           ||||   C
  TCCCGAACAAGC  AAT AGG   GGGTACACCTAAC TACCCTAACCT                           ACCC   
AA            -C   A   ATA             C           TTTTTAACACTTTCTAAAACTGAACAA    TAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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