SE2230139

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4862
  • Zea mays
  • SE2230139
  • hAT
  • Hat24
  • chr5:158544256-158544425
  • ATCTGACT
  • TCTGACTCAGTAGCGAAGCTAGCAAATATTTTATCGGGGTCATTAGT

Secondary structure and sequence

TSD    TIR
5'



3'
 A  T  C    TA   A    A  AAA      ATC       TTA  ATTA   A  --        ------A   -     -CTTT    A
  TC GA TCAG  GCG AGCT GC   TATTTT   GGGGTCA   GT    ACT CT  TAATTTTT       CTA TAGAA     TGTT 
  || || ||||  ||| |||| ||   ||||||   |||||||   ||    ||| ||  ||||||||       ||| |||||     |||| T
  AG CT AGTC  CGC TCGG CG   ATAAAA   CCCCAGT   CG    TGA GG  ATTAAAAA       GAT ATCTT     ACAA 
TC  T  -    CC   C    G  GAA      ---       ---  --AC   -  CC        ACTTATA   T     TTGTC    T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End