SE2230147

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4870
  • Zea mays
  • SE2230147
  • hAT
  • Hat26
  • chr4:186562783-186563348
  • TCTCCAAC
  • TAGGGCTGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TCTCCAAC            AAAAGCTC               GCTCGGGCTCGATCAGGCTCGGCTTGGCTCGGTGAGGCTCGCGAGCCTAAACGAGCCCGAGCCGAGCCTAATTCCATGGCTCGCTACACTAACGAGCCGAGCCGAGCCGGCTCGGTGAGGCTCGCGAGCCGGCTCGAGGCTCGGTCCAAACTTTTGCAGCTATCACCTGTCAGTTGTCAGTTTGTTTATTAGTGTCCAGTTATCTAGATCCAGTGACCAATGTGTTGTTTTGGTCACAACTCAC
        TAGGGCTGGAAA        GAGGCTCGCGAGCCG                                                                                                                                                                                                                                                    
        ||||||||||||        |||||||||||||||                                                                                                                                                                                                                                                     
        ATCCCGACCTTT        GCTCGGCTCGGCTCG                                                                                                                                                                                                                                                    
CAACCTCT            --------               GTCCGAGTCGAGCCGAGCCACTCCGAGCCACCTTATCGCTCGGCTCGGTCCGAGCCGAGCCAGTGAAGCGCTCGAGCTACTACTCCGAGCCGAACCGAGCTATATCCGAGCGCTCGGCCGAGCCGAGCCGAGCGCTCGGACATGTGAGTTCATGAGTTGTTGTTATTAATACCAGTAATCGAATTTAAACTTCGTGTTATACAAGGTATATTATTTTTTAATACAGGGACGTGAGATCAAGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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