SE2250151

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4874
  • Zea mays
  • SE2250151
  • PIF/harbinger
  • To57
  • chr3:17798583-17798716
  • CAA
  • GGGCTTGTTTGGGACAAAGGGTAATGGAGGGGATTGAGGGGGCTATAATCCCTCACTATT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAA              CA             GGG             T       C      CAAA
   GGGCTTGTTTGGGA  AAGGGTAATGGAG   ATTGAGGGGGCTA AATCCCT ACTATT    
   ||||||||||||||  |||||||||||||   ||||||||||||| ||||||| ||||||     
   CCCGAACAAACCCT  TTTCCATTACCTC   TAACTCCCCCGAT TTAGGGG TGATGA    
AAC              AA             ACA             C       A      ATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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