SE2250152

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4875
  • Zea mays
  • SE2250152
  • PIF/harbinger
  • To58
  • chr5:211003452-211003576
  • TAA
  • AGGGCTACTTTGGGAACCTCAAATCCCTTTCAAGATTGAAGAGGATTGAGATAGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA       C         C       CC    AA        A      -   TA     GAA
  AGGGCTA TTTGGGAAC TCAAATC  TTTC  GATTGAAG GGATTG AGA  GAAAT   
  ||||||| ||||||||| |||||||  ||||  |||||||| |||||| |||  |||||    
  TCCCGAT AAACCTTTG AGTTTAG  GAAG  TTAACTTC CCTAAC TCT  CTTTA   
AA       C         -       AA    AC        C      C   -C     ATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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