SE2250153

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4876
  • Zea mays
  • SE2250153
  • PIF/harbinger
  • To46
  • chr5:158819538-158819675
  • GTA
  • GGGCTAGTTTGGGAGCCACAAAACCGAAGGGTATTGGAGGGGCTAAATTCCCCTTCTTATATTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTA                CAC  AA        T                            AT   AA
   GGGCTAGTTTGGGAGC   AA  CCGAAGGG ATTGGAGGGGCTAAATTCCCCTTCTTAT  TCA  
   ||||||||||||||||   ||  |||||||| ||||||||||||||||||||||||||||  |||   
   CCCGATCAAACCCTCG   TT  GGCTTCTC TAACCTCCCCGATTTAAGGGGAAGAATA  AGT  
ATG                ATA  TG        C                            --   TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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