SE2250156

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4879
  • Zea mays
  • SE2250156
  • PIF/harbinger
  • To51
  • chr5:196594671-196595083
  • TTA
  • AGACTGTCTCCAGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      T              TCTATATACATCCTCTATATCCGTCCTTTACAGTCTTCTCTAAAAGATTCTACCCCCTATATCTATTTCCTCTCCAACAACGTCCTCTAAATCACGTCCCCTATATGTAAATACCTATATTAAAGACATTTTTATTTTTAAATTTTTGTACATACGTGTTTGTCATACTCTCAAATGTATTGT
  AGACTG CTCCAGCAACGTCC                                                                                                                                                                                       
  |||||| ||||||||||||||                                                                                                                                                                                       A
  TCTGAT GAGGTTGTTCCTCG                                                                                                                                                                                       
AT      C              AGATTTACGAGGACATGGGATTTAAATCTCCTACTCCTGCAGGAGATGGGGAGGTTGTTACAGGAGATTTGCCAGGAGATTTAAATCTCCTGCGACGACCTAGGAGATACATATCTCAATGAGATTTGCCAAGAGATAGATAAACTTATGAAATTTGTTGGCAAAATCATTTTGATTTTATAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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