SE2230158

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4881
  • Zea mays
  • SE2230158
  • hAT
  • Hat28
  • chr6:74964881-74965641
  • GGTACGCC
  • GGTACGCCTATAGGTGTACATTTGTG

Secondary structure and sequence

TSD    TIR
5'



3'
   AC       G       TT    CTGTGCTTAATA        CAAAGCA     TTTTT   ACGGCCCATATCTGGCACGGCCCAACCTAATTGTGGGCCTGGGCCGGCACGGCCCACATTGTGGGCCGTGCCTGGGCCTCAAGTCAAGCCCACGGGCCGGCCTGGCACGGCCCATTTAACTAAGGCCCACCGAGGCCCACTAAATATAGACTCAGTATTTAACTAAGGTCCATCAAATCCCACATGACTAGCATAACTTGGAGAATCTAGAGCTTCAATAAGCCATCGAAAACCAATACCTATATATGGATAGTGAATAGTGATGATGATCATTGTATATGTATTCTGTATGGATGTATAGTACTCAATTAAACACTAAACAGAGAA
GGT  GCCTATA GTGTACA  TGTG            GGCCGGCC       CACAA     GGC                                                                                                                                                                                                                                                                                                                                       
|||  ||||||| |||||||  ||||            ||||||||       |||||     |||                                                                                                                                                                                                                                                                                                                                        
CCG  TGGATAT TACATGT  ACAC            CCGGCCGG       CCGGG     CCG                                                                                                                                                                                                                                                                                                                                       
   CA       G       --    ------------        ------A     -----   TGCCGTGTCCGGGTGTTTTCGTGCCGGGTGTTTCCGTGCCGGGTGTTTTCGTGTATAGATTAATACCCGGCACGGCACGGTCGTGCACACGGGTCAGTAGCCGGGTGCCGTGCCGGGTGTTAATCAATACACACGGTCCGGCCGGGTTTATCGGGTTTTACAGAATTACACAGTCTGGCCGGGTATATGTATGTTGTCATTATGTAGTTGTTTTTCATATTTTATATATATACTGGTTTTATTTTGATTCTACAAAACACCTACGTGTAATATTTGGAAACCAGTCTTTCTTTTTTTATAATGTTGATCGAGTGTTTATTATAAGTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End