Plant MITE

SE2230159

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4882
Zea mays
SE2230159
hAT
Hat29
chr7:171062618-171062763
GTGCCAAA
GTGCCA

Secondary structure and sequence

TSD TIR

5'

3'

          AACA             GTC       C TC    C -C        AACTGGC       CT    ATACC
    GTGCCA    GTGTTCTTAAGGC   GCCTAGG G  CAGG G  CCGGGCAA       CGCCTTG  CGCC     
    ||||||    |||||||||||||   ||||||| |  |||| |  ||||||||       |||||||  ||||     C
    CGTGGT    CACAAGAATTCCG   CGGATCC C  GTTC C  GGTCTGTT       GCGGAAT  GCGG     
AAAC      ----             ---       A TC    A CT        ------A       -C    ATCCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2230159

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2230159