SE2250163

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4886
  • Zea mays
  • SE2250163
  • PIF/harbinger
  • To60
  • chr6:143029645-143029980
  • TTA
  • AGGTAGTGTTTGGTTGAGGAGCCAAGTAGAACGGAGTCGTTCCATCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                                    TC    CA   --CTGATTCTA                  -    T   TGGTAATCTGGAACGGAGCGGTTCTGTTTTTTGTTTGGTTGCAGAGTGAATGGAACGGAGCGTGACTGTGAGAGCGGGATTGG
  AGGTAGTGTTTGGTTGAGGAGCCAAGTAGAACGGAG  GTTC  TCC           GGAACGGAGCCGCTCTGT TCTG GTT                                                                                   
  ||||||||||||||||||||||||||||||||||||  ||||  |||           |||||||||||||||||| |||| |||                                                                                    
  TCCATCACAAACCAACTTCTCGGTTCATCTTGCCTT  CAAG  AGG           AACAAACCAATGTTTCAT GATC TTG                                                                                   
AT                                    GC    AC   ATCAAAACAAC                  T    -   CCTTACCGAGGTTAATCCCTTATAAGAGGAGTCTAGGCCTTGGTAAGGCGAGGTTTTTTAGTTACCTTGCCTCGGCGAGGCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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