Plant MITE

SE2230166

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4889
Zea mays
SE2230166
hAT
Hat27
chr5:158483326-158483509
GTATGAGT
TCATAGTCACAA

Secondary structure and sequence

TSD TIR

5'

3'

GTATGAG            AGTTCTC      ATA  GT  AG  AC   -   GAGGAA -  GGTA    AACTGTGAGAGGTTTTTACATGGTGGTAATG
       TCATAGTCACAA       GGAACG   GG  CG  GG  GGG GTT      C AT    CGCT                               
       ||||||||||||       ||||||   ||  ||  ||  ||| |||      | ||    ||||                                
       GGTATCAGTGTT       CTTTGC   CC  GC  CC  CGT GGG      A CT    AGGC                               
TGAGTAT            -------      ---  AT  CA  AT   T   ------ G  ----    CTTTGCACTGGGTCTTTGCGCCCCAGTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2230166

GTATGAGTCATAGTCACAAAGTTCTCGGAACGATAGGGTCGAGGGACGGGGTTGAGGAACATGGTACGCTAACTGTGAGAGGTTTTTACATGGTGGTAATGAAAATGACCCCGCGTTTCTGGGTCACGTTTCCGGATCGAGGGTTGCTACCACCGTACCCGTTTCTTGTGACTATGGTATGAGT

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