Plant MITE

SE2220167

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4890
Zea mays
SE2220167
Mutator
M1
chr5:92042648-92042910
GCCGGCCTA
GCCGGCCTAGGCAACAACTAATATACAATTAGATCTTATGTGCAAGCGTGCAAGCGAGGTTACTGGTCCATTAGATTATGATCTAACT

Secondary structure and sequence

TSD TIR

5'

3'

         CTA               A       A      G              C      AC                         AT    TATA  -  ACACTTAAACCTTTATACCACCAGCTCGTGTA
   GCCGGC   GGCAACAACTAATAT CAATTAG TCTTAT TGCAAGCGTGCAAG GAGGTT  TGGTCCATTAGATTATGATCTAACT  GTAT    TT TA                                
   ||||||   ||||||||||||||| ||||||| |||||| |||||||||||||| ||||||  |||||||||||||||||||||||||  ||||    || ||                                 
   CGGTCG   CCGTTGTTGATTATA GTTAGTT GGAATA ACGTTTGCATGTTC TTCCGA  ACCAGGTAATCTAGTACTAGATTGA  CATC    TA AT                                
ATC      ---               C       C      A              A      GA                         --    ----  T  TAACATCAAACAATCACCCAAAAGATATTTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220167

GCCGGCCTAGGCAACAACTAATATACAATTAGATCTTATGTGCAAGCGTGCAAGCGAGGTTACTGGTCCATTAGATTATGATCTAACTATGTATTATATTTAACACTTAAACCTTTATACCACCAGCTCGTGTAGATTTATAGAAAACCCACTAACAAACTACAATTATATCTACAGTTAGATCATGATCTAATGGACCAAGAGCCTTACTTGTACGTTTGCAAATAAGGCTTGATTGCATATTAGTTGTTGCCGCTGGCCTA

Copy Cancel