Plant MITE

SE2210171

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4894
Zea mays
SE2210171
Tc1/Mariner
St8
chr5:3352165-3352328
TA
TACTCCCTCCGTACCAAAATAGTATTCGTTTTAGGTTGTT

Secondary structure and sequence

TSD TIR

5'

3'

         C  A   A    G A  C      GG     ---AAT    T    -  ATATTTGATGTATGTGTTTTATATATG
TACTCCCTC GT CCA AATA T TT GTTTTA  TTGTT      GGAT CATA CA                           
||||||||| || ||| |||| | || ||||||  |||||      |||| |||| ||                            
ATGAGGGAG CA GGT TTAT A AA TAAAAT  AACAA      ACAC AGGT TA                           
         A  A   G    G C  A      -G     ATAAAA    -    A  AGTTTACCTACTGTTACTTAGATCTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2210171

TACTCCCTCCGTACCAAAATAGTATTCGTTTTAGGTTGTTAATGGATTCATACAATATTTGATGTATGTGTTTTATATATGTGTCTAGATTCATTGTCATCCATTTGAATATGGACACAAAAATAAACAAGTAAAATAAACAGTATTGTGGAACAGAGGGAGTA

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