Plant MITE

SE2250182

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4905
Zea mays
SE2250182
PIF/harbinger
To65
chr5:145781235-145781562
TTA
AGACCAACTCCAGCAACACTCCGTATCCC

Secondary structure and sequence

TSD TIR

5'

3'

TT               -  ----A           A  -- C C   C --  TTTTGCACGGTCTGAGGCACTATTGCGCGCTCCAGCAGGCTCCGCATCCCTCTCCGCAAAATGGACGCCGTGTCCCTGCGCTCCCCATTTCCACACTTTCTCTCTCCTCTCCGCAG
  AGACCAACTCCAGCA AC     CTCCGTATCCC CT  C G ATC G  CA                                                                                                                    
  ||||||||||||||| ||     ||||||||||| ||  | | ||| |  ||                                                                                                                    C
  TCTGGTTGAGGTCGT TG     GAGGCATAGGG AT  T G CGC G  GG                                                                                                                    
AT               C  AGAGA           -  TT - -   - CC  TTGTGTAAGAGAGAGGAGAGGCATAGGCAGAGGCAAAGGTCGTTGTGAGGGGTAGGGTGAGGCGTACGTCAGATACTGTGGACCCCGGGCGGTCGTCCGCGCGCGCGTGCGTCTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250182

TTAGACCAACTCCAGCAACACTCCGTATCCCACTCCGCATCCGCATTTTGCACGGTCTGAGGCACTATTGCGCGCTCCAGCAGGCTCCGCATCCCTCTCCGCAAAATGGACGCCGTGTCCCTGCGCTCCCCATTTCCACACTTTCTCTCTCCTCTCCGCAGCTCTCTGCGTGCGCGCGCGCCTGCTGGCGGGCCCCAGGTGTCATAGACTGCATGCGGAGTGGGATGGGGAGTGTTGCTGGAAACGGAGACGGATACGGAGAGGAGAGAGAATGTGTTGGCCGCGCGTTTTAGGGATACGGAGAGAGAGTCTGCTGGAGTTGGTCTTA

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