Plant MITE

SE2250192

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4915
Zea mays
SE2250192
PIF/harbinger
To69
chr5:142639622-142639764
ATA
GGGCTTGTTCG

Secondary structure and sequence

TSD TIR

5'

3'

ATA  G        TTTCGCCGCTAA              -   G     A TC  TTTAATTCCATAGCAAG
   GG CTTGTTCG            TCCATGTGGATTGG GTG TATTG G  GG                 
   || ||||||||            |||||||||||||| ||| ||||| |  ||                  
   CC GAACAAGC            AGGTACACCTAACC CAC ATAAC C  CC                 
ATA  G        -CAATAAAGTTA              A   -     C TA  TAACCTTACCTAAAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250192

ATAGGGCTTGTTCGTTTCGCCGCTAATCCATGTGGATTGGGTGGTATTGAGTCGGTTTAATTCCATAGCAAGTCAAAATCCATTCCAATCCATCCCAATACACACCAATCCACATGGAATTGAAATAACCGAACAAGGCCATA

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