SE2250193

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4916
  • Zea mays
  • SE2250193
  • PIF/harbinger
  • To53
  • chr5:80409761-80410052
  • TTA
  • AGAGCATCTCCAAGAGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                  ----------------------A   TAAATAGCTTATCAAGCTAAATTTTAGCTAATTAATAGCATAATAGCTCTCCAACAGAGTAGTCATTTAACTTGCTAAGTTATCTGGCTCTCTAAATTAACTCCCTCACTA
  AGAGCATCTCCAAGAGAC                       AGT                                                                                                               
  ||||||||||||||||||                       |||                                                                                                                
  TCTCGTAGAGGTTCTCTG                       CTG                                                                                                               
AT                  ACAAATAAAAAATGAGAGATAAA   AGAAATAAACAGAGAGGTATTTATAATTTGAGATATATATTGTAGAGTAATGTTGTCTGAGAGGTTTTACGTTAAATCGAAACGATCGCTCTCAACGATCGGTTTAAACCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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