Plant MITE

SE2250194

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4917
Zea mays
SE2250194
PIF/harbinger
To70
chr5:191369089-191369308
TTA
GGCCCTGTTTGTTTCCCTCCTAGATTATATAAGTTGGATTGTGGTGGAAGGGTAGGAGAGTAAAATATCACTTTGAGGTCACAAATAAGCTGAAATAAGCTA

Secondary structure and sequence

TSD TIR

5'

3'

 TTA   CC         -  -                G                         A                A             C            TCCA
    GGC  TGTTTGTTT CC CTCCTAGATTATATAA TTGGATTGTGGTGGAAGGGTAGGAG GTAAAATATCACTTTG GGTCACAAATAAG TGAAATAAGCTA    
    |||  ||||||||| || |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||     
    CCG  ACAAATAAA GG GAGGATCTAATATATT AACCTAACACCACCTTCCCATTCTC CATTTTATGGTGAAAT CTGGTGTTTATTC ACTTTATTCGAT    
ATTC   -C         A  C                A                         C                A             C            CATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250194

TTAGGCCCTGTTTGTTTCCCTCCTAGATTATATAAGTTGGATTGTGGTGGAAGGGTAGGAGAGTAAAATATCACTTTGAGGTCACAAATAAGCTGAAATAAGCTATCCAATACTAGCTTATTTCACCTTATTTGTGGTCATAAAGTGGTATTTTACCCTCTTACCCTTCCACCACAATCCAAATTATATAATCTAGGAGCGGAAAATAAACACGCCCTTA

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