SE2230195

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4918
  • Zea mays
  • SE2230195
  • hAT
  • Hat35
  • chr6:76884108-76884290
  • CCTCCAGA
  • CTCCAGACAGAAGTGGGCCCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
C  CC  A    A       C  ACATTTGAGATT    A    AAAATTCAAAAGATTAAAGAAATTAT  C    AC C  TTTTGTGTAATATATTATTGACAAATTAC
 CT  AG CAGA GTGGGCC AG            GGGT TTCA                          TG TCTA  G TA                             
 ||  || |||| ||||||| ||            |||| ||||                          || ||||  | ||                             T
 GA  TC GTCT CGCCCGG TC            CCCA AAGT                          AC CCAT  A AG                             
A  CC  C    C       A  -----------C    -    --------------------------  -    -- -  TAACTTATGGGTTCAAAAACCACTAGATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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